References

This is a collection of references related to the original Biome-BGC model and to Biome-BGCMuSo.

Bond-Lamberty, B., Gower, S.T., Ahl, D.E., 2007. Improved simulation of poorly drained forests using Biome-BGC. Tree Physiology 27, 703-715.

Di Vittorio, A.V., Anderson, R.S., White J.D., Miller, N.L., Running, S.W., 2010. Development and optimization of an Agro-BGC ecosystem model for C4 perennial grasses. Ecological Modelling 221, 2038-2053. doi:10.1016/j.ecolmodel.2010.05.013

Farquhar, G.D., von Caemmerer, S., Berry, J.A., 1980. A bio-chemical model of photosynthetic CO2 assimilation in leaves of C3 species. Planta 149, 78-90.

Franks, P.J., Adams, M.A., Amthor, J.S., Barbour, M.M., Berry, J.A., Ellsworth, D.S., Farquhar, G.D., Ghannoum, O., Lloyd, J., McDowell, N., Norby, R.J., Tissue, D.T. and von Caemmerer, S., 2013. Sensitivity of plants to changing atmospheric CO2 concentration: from the geological past to the next century. New Phytologist 197, 1077-1094. doi: 10.1111/nph.12104

Hashimoto, S., Morishita, T., Sakata, T., Ishizuka, S., Kaneko, S., Takahashi, M., 2011. Simple models for soil CO2, CH4, and N2O fluxes calibrated using a Bayesian approach and multi-site data. Ecological Modelling 222, 1283-1292. doi:10.1016/j.ecolmodel.2011.01.013

Hidy, D., Barcza, Z., Haszpra, L., Churkina, G., Pintér, K., Nagy, Z., 2012. Development of the Biome-BGC model for simulation of managed herbaceous ecosystems. Ecological Modelling 226, 99-119. doi:10.1016/j.ecolmodel.2011.11.008

Hidy, D., Barcza, Z., Marjanovic, H., Ostrogovic Sever, M. Z., Dobor, L., Gelybó, G., Fodor, N., Pintér, K., Churkina, G., Running, S., Thornton, P., Bellocchi, G., Haszpra, L., Horváth, F., Suyker, A., and Nagy, Z., 2016. Terrestrial ecosystem process model Biome-BGCMuSo v4.0: summary of improvements and new modeling possibilities. Geosci. Model Dev., 9, 4405-4437. doi:10.5194/gmd-9-4405-2016

Hidy, D., Barcza, Z., Hollós, R., Dobor, L., Ács, T., Zacháry, D., Filep, T., Pásztor, L., Incze, D., Dencso, M., Tóth, E., Merganicová, K., Thornton, P., Running, S., Fodor, N., 2022. Soil-related developments of the Biome-BGCMuSo v6.2 terrestrial ecosystem model. Geoscientific Model Development, 15, 2157–2181. doi:10.5194/gmd-15-2157-2022

IPCC, 2006. 2006 IPCC Guidelines for National Greenhouse Gas Inventories, Prepared by the National Greenhouse Gas Inventories Programme. Eggleston H.S., Buendia L., Miwa K., Ngara T. and Tanabe K. (eds). Published: IGES, Japan.

Jarvis, N.J., 1989. A simple empirical model of root water uptake. Journal of Hydrology 107, 57-72.

Kattge, J., Knorr, W., 2007. Temperature acclimation in a biochemical model of photosynthesis: a reanalysis of data from 36 species. Plant Cell and Environment, 30, 1176-1190.

Kattge, J., Diaz, S., Lavorel, S., Prentice, I.C., Leadley, P., Bonisch, G., Garnier, E., Westoby, M., Reich, P.B., Wright, I.J., Cornelissen, J.H.C., Violle, C., Harrison, S.P., Van Bodegom, P.M., Reichstein, M., Enquist, B.J., Soudzilovskaia, N. A., Ackerly, D.D., Anand, M., Atkin, O., Bahn, M., Baker, T.R., Baldocchi, D., Bekker, R., Blanco, C.C., Blonder, B., Bond, W.J., Bradstock, R., Bunker, D.E., Casanoves, F., Cavender-Bares, J., Chambers, J.Q., Chapin, F.S., Chave, J., Coomes, D., Cornwell, W.K., Craine, J.M., Dobrin, B.H., Duarte, L., Durka, W., Elser, J., Esser, G., Estiarte, M., Fagan, W.F., Fang, J., Fernandez-Mendez, F., Fidelis, A., Finegan, B., Flores, O., Ford, H., Frank, D., Freschet, G.T., Fyllas, N.M., Gallagher, R. V., Green, W. A., Gutierrez, A. G., Hickler, T., Higgins, S.I., Hodgson, J.G., Jalili, A., Jansen, S., Joly, C. A., Kerkhoff, A. J., Kirkup, D., Kitajima, K., Kleyer, M., Klotz, S., Knops, J.M.H., Kramer, K., Kuhn, I., Kurokawa, H., Laughlin, D., Lee, T.D., Leishman, M., Lens, F., Lenz, T., Lewis, S.L., Lloyd, J., Llusia, J., Louault, F., Ma, S., Mahecha, M.D., Manning, P., Massad, T., Medlyn, B.E., Messier, J., Moles, A. T., Muller, S.C., Nadrowski, K., Naeem, S., Niinemets, U., Nollert, S., Nuske, A., Ogaya, R., Oleksyn, J., Onipchenko, V.G., Onoda, Y., Ordonez, J., Overbeck, G., Ozinga, W. A., Patino, S., Paula, S., Pausas, J.G., Penuelas, J., Phillips, O.L., Pillar, V., Poorter, H., Poorter, L., Poschlod, P., Prinzing, A., Proulx, R., Rammig, A., Reinsch, S., Reu, B., Sack, L., Salgado-Negret, B., Sardans, J., Shiodera, S., Shipley, B., Siefert, A., Sosinski, E., Soussana, J.F., Swaine, E., Swenson, N., Thompson, K., Thornton, P., Waldram, M., Weiher, E., White, M., White, S., Wright, S.J., Yguel, B., Zaehle, S., Zanne, A. E., Wirth, C., 2011. TRY - a global database of plant traits. Global Change Biology 17, 2905-2935. doi:10.1111/j.1365-2486.2011.02451.x

Ma, S., Churkina, G., Wieland, R., Gessler, A., 2011. Optimization and evaluation of the ANTHRO-BGC model for winter crops in Europe. Ecological Modelling 222, 3662-3679. doi:10.1016/j.ecolmodel.2011.08.025

Pietsch, S.A., Hasenauer, H., Kucera, J., Cermak, J., 2003. Modeling effects of hydrological changes on the carbon and nitrogen balance of oak in floodplains. Tree Physiology 23, 735-746.

Rogers, A., Medlyn, B.E. and Dukes, J.S., 2014. Improving representation of photosynthesis in Earth System Models. New Phytologist 204, 12-14. doi: 10.1111/nph.12972

Running, S.W., Coughlan, J.C., 1988. A general model of forest ecosystem processes for regional applications I. Hydrological balance, canopy gas exchange and primary production processes. Ecological Modelling 42, 125-154.

Running, S.W., Gower, S.T., 1991. A general model of forest ecosystem processes for regional applications II. Dynamic carbon allocation and nitrogen budgets. Tree Physiology 9, 147-160.

Running, S.W., Hunt, E.R.J., 1993. Generalization of a forest ecosystem process model for other biomes, BIOME-BGC, and an application for global-scale models. In: Scaling Physiological Processes: Leaf to Globe (ed.: Ehleringer, J. R., Field, C.B.). San Diego, Academic Press, 141-158.

Sándor, R., Fodor, N., 2012. Simulation of Soil Temperature Dynamics with Models Using Different Concepts. The Scientific World Journal, vol. 2012, 1-8. doi:10.1100/2012/590287

Smith, N.G., Dukes, J.S., 2013. Plant respiration and photosynthesis in global-scale models: Incorporating acclimation to temperature and CO2. Global Change Biology 19, 45-63. doi:10.1111/j.1365-2486.2012.02797.x

Thornton, P.E., 1998. Regional ecosystem simulation: combining surface- and satellite-based observations to study linkages between terrestrial energy and mass budgets. Ph.D. dissertation. School of Forestry, University of Montana, Missoula MT, 280 pp.

Thornton, P.E., 2000. User's Guide for Biome-BGC, Version 4.1.1.

Thornton, P.E., Running, S.W., 2002. User's Guide for Biome-BGC, Version 4.1.2. Available online

Tjoelker, M.G., Oleksyn, J., Reich, P.B., 2001. Modelling respiration of vegetation: evidence for a general temperature-dependent Q10. Global Change Biology 7, 223-230.

Trusilova, K., Trembath, J., Churkina, G., 2009. Parameter estimation and validation of the terrestrial ecosystem model Biome-BGC using eddy-covariance flux measurements. Max-Planck-Institut fur Biogeochemie, Technical Reports 16, 1-60.

White, M.A., Thornton, P.E., Running, S.W., Nemani, R.R., 2000. Parameterization and sensitivity analysis of the Biome-BGC terrestrial ecosystem model: net primary production controls. Earth Interactions 4, 1-85.

Wullschleger, S.D., 1993. Biochemical limitations to carbon assimilation in C3 plants - a retrospective analysis of the A/Ci curves from 109 species. Journal of Experimental Botany 44, 907-920.

Zheng, D., Raymond, H., Running, S.W., 1993. A daily soil temperature model based on air temperature and precipitation for continental applications. Climate Research 2, 183-191.